Orthogonal Acceleration Coaxial Cylinder Time of Flight Mass Analyser

ABSTRACT

A Time of Flight mass analyser is disclosed comprising an annular ion guide having a longitudinal axis and comprising a first annular ion guide section and a second annular ion guide section. Ions are introduced into the first annular ion guide section so that the ions form substantially stable circular orbits within the first annular ion guide section about the longitudinal axis. An ion detector is disposed within the annular ion guide. Ions are orthogonally accelerated in a first axial direction from the first annular ion guide section into the second annular ion guide section. An axial DC potential is maintained along at least a portion of the second annular ion guide section so that the ions are reflected in a second axial direction which is substantially opposed to the first axial direction. The ions undergo multiple axial passes through the second annular ion guide section before being detected by the ion detector.

CROSS-REFERENCE TO RELATED APPLICATION

This application claims priority from and the benefit of U.S.Provisional Patent Application Ser. No. 61/650,008 filed on 22 May 2012,European Patent Application No. 12168612.5 filed on 21 May 2012, UnitedKingdom Patent Application No. 1208847.2 filed on 18 May 2012, UnitedKingdom Patent Application No. 1216489.3 filed on 14 Sep. 2012, UnitedKingdom Patent Application No. 1216488.5 filed on 14 Sep. 2012 andUnited Kingdom Patent Application No. 1216486.9 filed on 14 Sep. 2012.The entire contents of these applications are incorporated herein byreference.

BACKGROUND TO THE PRESENT INVENTION

The present invention relates to a Time of Flight mass analyser, a massspectrometer, a method of mass analysing ions and a method of massspectrometry.

Reference is made to W. C. Wiley, I. H. McLaren, “Time-of-Flight MassSpectrometer with Improved Resolution” Review of Scientific Instruments26, 1150 (1955) which sets out the basic equations that describe twostage extraction Time-of-Flight mass spectrometers. The principles applyequally to continuous axial extraction Time of Flight mass analysers,orthogonal acceleration Time of Flight mass analysers and time lagfocussing instruments.

FIG. 1 shows the principle of spatial (or space) focussing whereby ionswith an initial spatial distribution are brought to a focus at the planeof a detector so improving instrumental resolution.

The ion velocity and positional distributions are represented as phasespace ellipses as shown in FIG. 2 which describe the condition of theion beam as it traverses the instrument. A knowledge of the nature ofphase space and Liouville's theorem is helpful to the understanding ofvarious aspects of the preferred embodiment of the present invention.

A fundamental theorem in ion optics is Liouville's theorem which statesthat “For a cloud of moving particles, the particle density ρ(x, p_(x),y, p_(y), z, p_(z)) in phase space is invariable.”, wherein p_(x),p_(y), & p_(z) are the momenta of the three Cartesian coordinatedirections. Reference is made to “Geometrical Charged-Particle Optics”,Harald H. Rose, Springer Series in Optical Sciences 142.

According to Liouville's theorem, a cloud of particles at a time t₁ thatfills a certain volume in phase space may change its shape at a latertime t_(n) but not the magnitude of its volume. Attempts to reduce thisvolume by the use of electromagnetic fields is futile although it is ofcourse possible to sample desired regions of phase space by aperturingthe beam (rejecting un-focusable ions) before subsequent manipulation. Afirst order approximation splits Liouville's theorem into the threeindependent space coordinates x, y and z. The ion beam can now bedescribed in terms of three independent phase space areas the shape ofwhich change as the ion beam progresses through an ion optical systembut not the total area itself. This concept is illustrated in FIG. 3which shows an optical system comprising N optical elements with eachelement changing the shape of the phase space but not its area.

Ion distributions emanating from radio frequency ion guides containingbuffer gases can typically be described in phase space distributionsthat are elliptical in shape. Such RF guides are commonly used tointerface continuous ion beam sources such as Electrospray ionisation toTime of Flight mass analyser mass spectrometers. So it is the goal ofthe Time of Flight mass analyser designer to utilise the concept ofspatial focussing to manipulate the initial ion beam represented by aphase space ellipse with large spatial distribution into one with asmall distribution at the plane of the detector. Small spatialdistributions at the detector plane coupled with long flight times makefor high resolution Time of Flight mass analyser spectrometers. It isdesired that the detector plane be isochronous for any particular massto charge ratio. Generally Time of Flight mass analyser instrumentsdisperse in mass to charge ratio according to the square of the time offlight (i.e. square root of mass to charge ratio is proportional totime). However, it is true that any ion (regardless of mass to chargeratio) when accelerated through any general electrostatic system ofoptical elements will take the same trajectory. So that an orthogonalacceleration Time of Flight mass analyser which may be considered toconsist substantially of electrostatic elements, will bring ions ofdifferent mass to charge ratios into spatial focus at the same positionsin the spectrometer but at different times.

The isochronous plane may be defined as being a plane in thespectrometer where ions of a unique mass to charge ratio have the sametime of flight which is substantially independent of their initial phasespace distribution, and it is at such a plane where an ion detector issited for highest resolution. There are secondary effects which must beconsidered that make the Time of Flight mass analyser deviate from theideal mass to charge ratio independent electrostatic system such as thefinite rise time of the pusher, mass dependent phase spacecharacteristics of ions emanating from RF devices, and the relativetiming of pulsed ion packets and pulsed electric fields. These effectsand the deviations from the ideal electrostatic system will be explainedand discussed as they become relevant to the present invention.

The angle of inclination of the ellipse represents a correlatedposition/velocity distribution. An ellipse which has a large spatialextent and gentle inclination may be created by ion beams emanating fromRF guides that have been accelerated through transfer optics into thepusher (acceleration) region of an orthogonal Time of Flight massanalyser. Where the ellipse is of a vertical orientation (tall and thin)we have an isochronous plane where it may be possible to site an iondetector. The shape of the ellipses at different positions in thespectrometer as the ion beam traverses the instrument are presented inthe following diagrams describing the invention. It should be understoodthat no scale is given to either the velocity or position axes of theellipses and that they are for illustrative purposes to understand theprinciples underlying the operation of the invention only.

The simple two stage Wiley McLaren Time of Flight mass analyser as shownin FIG. 1 is created by defining three distinct regions bounded by fourprincipal planes P1, P2, P3, P4. The different field regions aretypically created by placing arrays of grid wires or meshes (knownhereafter as grids) at the positions of the principal planes each ofwhich has a potential (voltage) which may be static or pulsed in natureapplied to it. Acceleration and deceleration regions are visualised byinclined planes or curves along which the ions can be considered to rollwithout friction. Note that this gravitational analogy is not completelycorrect in that ions experience forces in proportion to their charge inelectrostatics and so ions of similar charge but different massaccelerate at rates inversely proportion to their mass (whereas ingravity the force is proportion to mass so all particles accelerate atthe same rate regardless of mass).

Each time the ion beam passes through a grid ions are lost due tocollisions with the grid wires and are also deflected by electric fieldvariations that exist in close proximity to the boundary due to thedifferent field strengths between the two adjacent regions (known asscattering). So as the beam traverses the spectrometer it gets weakerdue to these losses and also defocusing (divergence) of the ion beam dueto its initial velocity spread.

A voltage pulse Vp is applied to the pusher plate at P1 creating anorthogonal acceleration field extract a portion of the beam into theTime of Flight mass analyser. It is the timing of the application ofthis voltage pulse that serves as the start time for the Time of Flightmass analyser. All the ions of interest (different mass to chargeratios) are allowed to fly to the detector before the pusher can fireagain. The duty cycle of the sampling of the incoming ion beam istypically around 20% to allow an undistorted beam to be extracted, andthis figure falls off in inverse proportion to the square root of mass.It is advantageous to retain the initial (pre push) velocity of the ionsso that the resulting flight path of the ions is at an angle to theflight tube created by a vector between the two velocities, i.e. that ofthe incoming beam and that imparted by the spectrometer fields. Thisresulting vectorial trajectory enables placement of the ion detectoroffset to the pusher region which is advantageous for simplicity ofconstruction as will be explained more fully later on. Resolutions ofaround 5000 can be achieved for state of the art instruments employingthis type of geometry for a flight length of up to one metre.

Higher resolutions can be achieved in orthogonal acceleration Time ofFlight mass spectrometers by reflecting the ion beam back on itselfusing a reflectron. Such a device can be adjusted to give an isochronousplane in a field free region (“FFR”) while maintaining a compactinstrument geometry. With prudent adjustment of the voltages thisprocess can be repeated multiple times to increase the effective flightlength (and hence flight time of the ions) of the instrument whilemaintaining the existence of an isochronous plane in the field freeregion.

FIG. 4 shows an arrangement wherein ions are accelerated by a two stageacceleration region defined by planes P1, P2, P3 and enter a field freeregion (P3 to P4). The ions then traverse the reflectron defined byplanes P4, P5, P6 before returning through the field free region to asmall mirror defined by planes P3, P7. The ion beam is sent back to themain reflectron after which it is sent back through the field freeregion at the end of which is placed an ion detector at the position ofthe isochronous plane namely P3.

The vectorial trajectory whereby the beam retains its initial componentof direction of motion enables the ion detector to be placed adjacent tothe pusher region. Resolutions as high as 50,000 to 100,000 areachievable with such a geometry but this performance comes at a cost tosensitivity (ion transmission). In this case the ion beam passes throughgrids 12 times, attenuating the beam on each pass.

In addition to this loss, the ion beam is diverging due its initialvelocity spread and the scattering due to the fields in proximity to thegrids, so its cross section has increased dramatically at the iondetector plane. When these factors along with the finite duty cycle ofthe instrument are all factored in, transmission may be as low as 1% ofthe initial beam intensity therefore reducing the sensitivity of theinstrument.

WO 2005/040785 (Farnsworth) discloses a modified Spiratron arrangementwherein ions are introduced into the analyser using a pulsed electricfield applied to a third sector electrode 155 as shown in FIG. 5. Apacket of ions is sent into a pair of coaxial cylinders at an angle θ asshown in FIG. 6 where they undergo a helical trajectory 175 until theyare ejected to an ion detector which is located external to the guide(as is apparent from FIG. 3 wherein the ion detector 70 is shown locatedoutside of the flight tube). Ions attain stable trajectories by virtueof a pulsed voltage being applied to a third electrode. There is nodisclosure of how to get ions out of the device once they are in theflight tube at the detector end.

It is noted that page 9, lines 9-10 implies a T/ΔT of 1000 (1 kHzrepetition rate with 1 μs injection pulses) giving a maximum attainableresolution of 500. The low resolution is due to the fact that thedisclosed arrangement imparts only first order energy (or spatial)focussing characteristic to the ion packet in the radial dimension.

It is noted that page 9, lines 11-18 contemplates an arrangement using acontinuous Electrospray ion source wherein an upstream trap 90 may notbe provided. It is suggested that according to this arrangement ions maybe injected at θ=0° and the application of a voltage pulse to impart anaxial drift velocity to the ions is delayed. This arrangement is alsodescribed on page 15, lines 5-15.

It will be understood by those skilled in the art that if a beam of ionsis injected into the arrangement disclosed in WO 2005/040785 at θ=0°then in the context of the modified Spiratron arrangement disclosedtherein the ions would need to be restricted from making a full rotationbefore an axial field was applied. Importantly, ions injected into theannular region disclosed in WO 2005/040785 would assume differentrotational positions dependent upon their mass to charge ratio.Accordingly, ions having a relatively low mass to charge ratio mightmake nearly one rotation by the time that the axial field was appliedwhereas ions having a relatively high mass to charge ratio would makeonly a fraction of one rotation by the time that the axial field isapplied.

Allowing a delay between ion injection and orthogonal acceleration wouldtherefore result in ions having a mass dependent starting position suchthat the resolution of the mass analyser would be reduced even further.

With reference to FIG. 3 of WO 2005/040785 it is apparent that a port isprovided between the annular region and the ion detector 70 throughwhich ions must pass in order to be detected by the ion detector. Sinceions would have a starting position which is mass dependent at the timethat the axial field is applied, then ions having different masses wouldfollow different helical paths through the annular region. As a result,some ions will follow helical trajectories which would miss theextraction port and hence not be detected by the ion detector.

The modified Spiratron arrangement disclosed in WO 2005/040785 wouldtherefore also have a severe mass range limitation.

GB-2390935 (Verentchikov) discloses an arrangement as shown in FIG. 14which comprises two Time of Flight mass spectrometers. Parent ions areseparated in a first slow (and long) time of flight mass spectrometer(TOF1) which operates at low ion energies (1 to 100 eV) and fragmentions are subsequently mass analysed in a second fast and short time offlight mass spectrometer (TOF2) operating at much higher keV energy.Ions are injected into the first time of flight mass spectrometer TOF1at an angle of inclination relative to the axis of two electrodes sothat ions follow helical paths. It will be understood by those skilledin the art that the ions are not orthogonally accelerated into anannular ion guiding region. It is also apparent that the resolution ofthe arrangement disclosed in FIG. 14 is very low (R˜75).

It is desired to provide a high resolution, high transmission orthogonalacceleration Time of Flight mass analyser which is compact in size.

SUMMARY OF THE PRESENT INVENTION

According to an aspect of the present invention there is provided a Timeof Flight mass analyser comprising:

an annular ion guide having a longitudinal axis and comprising a firstannular ion guide section and a second annular ion guide section;

a first device arranged and adapted to introduce ions into the firstannular ion guide section so that the ions form substantially stablecircular orbits within the first annular ion guide section about thelongitudinal axis;

an ion detector disposed within the annular ion guide;

a second device arranged and adapted to orthogonally accelerate ions ina first axial direction from the first annular ion guide section intothe second annular ion guide section; and

a third device arranged and adapted to maintain an axial DC potentialalong at least a portion of the second annular ion guide section so thatthe ions are reflected in a second axial direction which issubstantially opposed to the first axial direction and so that the ionsundergo multiple axial passes through the second annular ion guidesection before being detected by the ion detector.

The arrangements disclosed in WO 2005/040785 (Farnsworth) comprisemodified Spiratron arrangements wherein ions follow helical orbits.

WO 2005/040785 does not disclose causing ions to form substantiallystable circular orbits within an annular ion guide section about thelongitudinal axis prior to being orthogonally accelerated.

WO 2005/040785 does not disclose an ion detector disposed within theannular ion guide. With reference to FIG. 3 of WO 2005/040785 it isapparent that the ion detector is not located within the annular ionguide and furthermore the ion detecting surface of the ion detector 70is arranged in a plane which is parallel to the longitudinal axis ratherthan being substantially perpendicular to the longitudinal axis.

WO 2005/040785 does not disclose maintaining an axial DC potential alongat least a portion of the annular ion guide section so that the ions arereflected in a second axial direction which is substantially opposed tothe first axial direction and so that the ions undergo multiple axialpasses through the annular ion guide.

It will therefore be appreciated that the modified Spiratron arrangementdisclosed in WO 2005/040785 operates in a fundamentally different mannerto the present invention.

In the arrangement disclosed in WO 2005/040785 ions are accelerated inthe flight tube and experience time of flight dispersion in a helicaldirection i.e. time of flight dispersion is in both a longitudinal and arotational direction.

In contrast, according to the present invention time of flightdispersion occurs only in a longitudinal direction.

Ions which are orthogonally accelerated are arranged to be spatiallyfocused to an isochronous plane which is substantially perpendicular tothe longitudinal axis.

This is in contrast to the modified Spiratron arrangement disclosed inWO 2005/040785 wherein the isochronous plane is parallel to thelongitudinal axis.

The ion detecting surface of the ion detector is preferably positionedsubstantially at the isochronous plane.

The second device is preferably arranged and adapted to apply a pulsedaxial electric field.

The second device is preferably arranged and adapted to apply a pulsedradial electric field at substantially the same time as the pulsed axialelectric field. The second device is preferably arranged and adapted toapply a pulsed radial electric field at substantially the same time asthe pulsed axial electric field so that the ions assume non-circular orelliptical orbits in a plane perpendicular to the longitudinal axis.

WO 2005/040785 does not teach or suggest applying a pulsed radialelectric field at the same time as applying a pulsed axial electricfield so that looking down the length of the annular ion guiding regionions assume elliptical rather than circular paths.

The second device is preferably arranged and adapted to orthogonallyaccelerate the ions into the second annular ion guide section so thatthe ions temporally separate according to their mass to charge ratio.

The second device is arranged and adapted to orthogonally accelerate theions so that time of flight dispersion occurs only in a longitudinaldirection.

Time of flight dispersion solely in a longitudinal direction representsa significant distinction of the present invention over known Spiratronarrangements such as the arrangement disclosed in WO 2005/040785 whereintime of flight dispersion is in a helical direction.

Furthermore, according to the present invention the detecting surface ofthe ion detector is arranged in a plane which is orthogonal orperpendicular to the longitudinal axis. This is because the isochronousplane of ions according to the present invention is substantiallyperpendicular to the isochronous plane of ions in the arrangementsdisclosed in WO 2005/040785.

The ion detector preferably has an annular, part annular or segmentedannular ion detecting surface.

Such an arrangement is not disclosed in WO 2005/040785.

According to the preferred embodiment the ion detector is locatedeither: (i) substantially in the centre of the annular ion guide or thesecond annular ion guide section; (ii) substantially at an end of theannular ion guide or the second annular ion guide section; (iii) at anend of a field free region; (iv) adjacent the first annular ion guidesection; or (v) distal to the first annular ion guide section.

The annular ion guide preferably comprises an inner cylindricalelectrode arrangement.

The inner cylindrical electrode arrangement is preferably axiallysegmented and comprises a plurality of first electrodes.

The annular ion guide preferably comprises an outer cylindricalelectrode arrangement.

The outer cylindrical electrode arrangement is preferably axiallysegmented and comprises a plurality of second electrodes.

According to the preferred embodiment an annular time of flight ionguiding region is formed between the inner cylindrical electrodearrangement and the outer cylindrical electrode arrangement.

The Time of Flight mass analyser preferably further comprises a devicearranged and adapted to apply DC potentials to the inner cylindricalelectrode arrangement and/or the outer cylindrical electrode arrangementin order to maintain a radial DC potential which acts to confine ionsradially within the annular ion guide.

The Time of Flight mass analyser preferably further comprises a controlsystem arranged and adapted:

(i) to apply one or more first voltages to one or more of the firstelectrodes and/or the second electrodes so that ions located in thefirst annular ion guide section precess or move in orbits about theinner cylindrical electrode arrangement; and then

(ii) to apply one or more second voltages to one or more of the firstelectrodes and/or the second electrodes so that ions are orthogonallyaccelerated into the second annular ion guide section so that ions passalong spiral paths through the second annular ion guide section in afirst axial direction;

(iii) optionally to apply one or more third voltages to one or more ofthe first electrodes and/or the second electrodes so that ions arereflected back in a second axial direction which is opposed to the firstaxial direction; and

(iv) to determine the time of flight of ions passing through the annularion guide or the second annular ion guide section.

The second device is preferably arranged and adapted to apply apotential difference across the first annular ion guide section so thations are orthogonally accelerated out of the first annular ion guidesection and pass into the second annular ion guide section.

Ions preferably follow substantially spiral paths as they pass throughthe second annular ion guide section. The spiral paths are preferablynon-helical along at least a portion of the annular ion guide or thesecond annular ion guide section such that the ratio of curvature totorsion of the spiral paths varies or is non-constant.

This is in contrast to the modified Spiratron arrangement disclosed inWO 2005/040785 wherein ions follow helical paths such that the ratio ofcurvature to torsion of the ion paths remains constant.

The Time of Flight mass analyser preferably further comprises a devicearranged and adapted to maintain one or more half-parabolic or other DCpotentials along a portion of the annular ion guide or the secondannular ion guide section in order to reflect ions.

Such an arrangement is not disclosed in WO 2005/040785.

The Time of Flight mass analyser preferably further comprises a devicearranged and adapted to maintain one or more parabolic DC potentialsalong a portion of the annular ion guide or the second annular ion guidesection so that ions undergo simple harmonic motion.

Such an arrangement is not disclosed in WO 2005/040785.

The annular ion guide or the second annular ion guide section preferablycomprises one or more reflectrons for reflecting ions in a reverse axialdirection. Such an arrangement is not disclosed in WO 2005/040785.

The second device is preferably arranged to orthogonally accelerate ionsat a time T1 and wherein the ions are detected by the ion detector at asubsequent time T₂ and wherein ions having a mass to charge ratio in therange<100, 100-200, 200-300, 300-400, 400-500, 500-600, 600-700,700-800, 800-900 or 900-1000 are arranged to have a total time of flightT2−T1 through the annular ion guide or the second annular ion guidesection selected from the group consisting of: (i) <50 μs; (ii) 50-100μs; (iii) 100-150 μs; (iv) 150-200 μs; (v) 200-250 μs; (vi) 250-300 μs;(vii) 300-350 μs; (viii) 350-400 μs; (ix) 400-450 μs; (x) 450-500 μs;and (xi) >500 μs.

Ions having different mass to charge ratios follow substantiallydifferent spiral paths through the annular ion guide or the secondannular ion guide section.

This is in contrast to a Spiratron arrangement as disclosed, forexample, in WO 2005/040785 wherein ions having different mass to chargeratios follow essentially the same helical path since the ionsexperience time of flight dispersion in the helical direction.

According to a preferred embodiment electrodes in the first annular ionguide section are segmented so that at least a first electric fieldsector and a second electric field sector are formed in use.

The Time of Flight mass analyser preferably further comprises a controlsystem arranged and adapted at a first time T1 to inject ionssubstantially tangentially into the first electric field sector whilstmaintaining a substantially zero radial electric field in the firstelectric field sector so that the ions experience a substantially fieldfree region whilst being injected into the first annular ion guidesection.

The control system is preferably further arranged and adapted tomaintain a radial electric field in the second electric field sector sothat at a second later time T2 ions pass from the first electric fieldsector into the second electric field sector and become radiallyconfined.

The control system is preferably further arranged and adapted at a thirdtime T3, wherein T3>T1, to cause a radial electric field to bemaintained in the first electric field sector so that as ions pass fromthe second electric field sector into the first electric field sectorthe ions continue to be radially confined and form substantially stablecircular orbits within the first annular ion guide section.

The second device is preferably arranged and adapted to orthogonallyaccelerate ions from the first annular ion guide section into the secondannular ion guide section at a fourth time T4, wherein T4>T3.

The Time of Flight mass analyser comprises a control system arranged andadapted to determine the time of flight of the ions orthogonallyaccelerated from the first annular ion guide section into the secondannular ion guide section.

The ion detector is preferably arranged and adapted to detect ionsimpacting or impinging upon an ion detection surface of the iondetector.

According to an aspect of the present invention there is provided a massspectrometer comprising a Time of Flight mass analyser as describedabove.

According to an aspect of the present invention there is provided amethod of mass analysing ions comprising:

providing an annular ion guide having a longitudinal axis and comprisinga first annular ion guide section and a second annular ion guidesection;

introducing ions into said first annular ion guide section so that saidions form substantially stable circular orbits within said first annularion guide section about said longitudinal axis;

providing an ion detector disposed within said annular ion guide;

orthogonally accelerating ions in a first axial direction from saidfirst annular ion guide section into said second annular ion guidesection; and

maintaining an axial DC potential along at least a portion of saidsecond annular ion guide section so that said ions are reflected in asecond axial direction which is substantially opposed to said firstaxial direction and so that said ions undergo multiple axial passesthrough said second annular ion guide section before being detected bysaid ion detector.

According to an aspect of the present invention there is provided amethod of mass spectrometry comprising a method of mass analysing ionsas described above.

According to an aspect of the present invention there is provided a Timeof Flight mass analyser comprising:

an annular ion guide having a longitudinal axis;

a device arranged and adapted to maintain an axial DC potential along atleast a portion of said annular ion guide; and

a device arranged and adapted to orthogonally accelerate ions into saidannular ion guide such that said ions become temporally separated andmake multiple axial passes and wherein time of flight dispersion occursonly in a longitudinal direction.

Such an arrangement is not disclosed in WO 2005/040785. According to thearrangement disclosed in WO 2005/040785 time of flight dispersion is inthe helical direction i.e. the time of flight dispersion does not occuronly or solely in the longitudinal direction. Furthermore, WO2005/040785 does not disclose maintaining an axial DC potential along aportion of the annular ion guide or causing the ions to make multipleaxial passes.

According to an aspect of the present invention there is provided amethod of mass analysing ions comprising:

providing an annular ion guide having a longitudinal axis;

maintaining an axial DC potential along at least a portion of saidannular ion guide; and

orthogonally accelerating ions into said annular ion guide such thatsaid ions become temporally separated and make multiple axial passes andwherein time of flight dispersion occurs only in a longitudinaldirection.

Such an arrangement is not disclosed in WO 2005/040785. According to thearrangement disclosed in WO 2005/040785 time of flight dispersion is inthe helical direction i.e. the time of flight dispersion does not occuronly or solely in the longitudinal direction. Furthermore, WO2005/040785 does not disclose maintaining an axial DC potential along aportion of the annular ion guide or causing the ions to make multipleaxial passes.

According to an aspect of the present invention there is provided a Timeof Flight mass analyser comprising:

an annular ion guide having a longitudinal axis; and

a device arranged and adapted to orthogonally accelerate ions into theannular ion guide so that the ions make multiple axial passes andwherein the ions are spatially focused to an isochronous plane which issubstantially perpendicular to the longitudinal axis.

This is in contrast to the arrangement disclosed in WO 2005/040785wherein the isochronous plane is parallel to the longitudinal axis andwherein ions do not make multiple axial passes.

According to an aspect of the present invention there is provided amethod of mass analysing ions comprising:

providing an annular ion guide having a longitudinal axis; and

orthogonally accelerating ions into said annular ion guide so that saidions make multiple axial passes and spatially focusing said ions to anisochronous plane which is substantially perpendicular to saidlongitudinal axis.

This is in contrast to the arrangement disclosed in WO 2005/040785wherein the isochronous plane is parallel to the longitudinal axis andwherein ions do not make multiple axial passes.

According to an aspect of the present invention there is provided a Timeof Flight mass analyser comprising:

an annular ion guiding region; and

a first device arranged and adapted to orthogonally accelerate ions intothe annular ion guiding region.

A person skilled in the art will appreciate that with known Spiratronarrangements ions follow a helical path. In contrast to such knownarrangements, the path taken by ions according to the preferredembodiment is not substantially helical. It will be appreciated that acurve is called a general helix if and only if the ratio of curvature totorsion is constant. According to the preferred embodiment ions do notmake uniform rotations along the axial direction.

The Time of Flight mass analyser preferably further comprises a firstcylindrical electrode arrangement.

The first cylindrical electrode arrangement is preferably axiallysegmented and comprises a plurality of first electrodes.

The Time of Flight mass analyser preferably further comprises a secondcylindrical electrode arrangement.

The second cylindrical electrode arrangement is preferably axiallysegmented and comprises a plurality of second electrodes.

The annular ion guiding region is preferably formed between the firstcylindrical electrode arrangement and the second cylindrical electrodearrangement.

In a first mode of operation ions preferably precess or move in orbitswithin a first portion of the annular ion guiding region.

The first device is preferably arranged and adapted to apply a potentialdifference across a first portion of the annular ion guiding region sothat ions are orthogonally accelerated out of the first portion of theannular ion guiding region and pass into a second portion of the annularion guiding region.

Ions preferably undergo one or more orbits and/or follow helical pathsas they pass through the second portion of the annular ion guidingregion.

The Time of Flight mass analyser preferably further comprises an iondetector.

The ion detector is preferably located within or adjacent the annularion guiding region.

The ion detector preferably has an annular ion detecting surface.

The ion detector is preferably located in the centre of the annular ionguiding region.

The ion detector is preferably located at the end of a field free regionand/or at an end of the annular ion guiding region.

The ion detector is preferably located adjacent the first portion of theannular ion guiding region.

The ion detector is preferably located distal to the first portion ofthe annular ion guiding region.

The Time of Flight mass analyser preferably further comprises a devicearranged and adapted to maintain one or more half-parabolic or otherpotentials along a portion of the annular ion guiding region in order toreflect ions.

The Time of Flight mass analyser preferably further comprises a devicearranged and adapted to maintain one or more parabolic potentials alonga portion of the annular ion guiding region so that ions undergo simpleharmonic motion.

The annular ion guiding region preferably comprises one or morereflectrons for reflecting ions in a reverse axial direction.

Ions are preferably orthogonally accelerated at a time T1 and aredetected at a time T2 and wherein ions having a mass to charge ratio inthe range<100, 100-200, 200-300, 300-400, 400-500, 500-600, 600-700,700-800, 800-900 or 900-1000 are arranged to have a total time of flightT2-T1 through the annular ion guiding region selected from the groupconsisting of: (i) <50 μs; (ii) 50-100 μs; (iii) 100-150 μs; (iv)150-200 μs; (v) 200-250 μs; (vi) 250-300 μs; (vii) 300-350 μs; (viii)350-400 μs; (ix) 400-450 μs; (x) 450-500 μs; and (xi)>500 μs.

According to an aspect of the present invention there is provided a massspectrometer comprising a Time of Flight mass analyser as describedabove.

According to an aspect of the present invention there is provided amethod of mass analysing ions comprising:

orthogonally accelerating ions into an annular ion guiding region; and

determining the time of flight of the ions.

According to an aspect of the present invention there is provided amethod of mass spectrometry comprising a method of mass analysing ionsas described above.

According to an aspect of the present invention there is provided a Timeof Flight mass analyser comprising:

an inner cylindrical electrode arrangement comprising a plurality offirst electrodes and an outer cylindrical electrode arrangementcomprising a plurality of second electrodes, wherein the outercylindrical arrangement is arranged about the inner cylindricalelectrode so as to form, in use, an annular ion guiding region betweenthe inner and outer electrodes;

an ion detector disposed within or at an end of the annular ion guidingregion; and

a control system arranged and adapted:

(i) to apply one or more first voltages to one or more of the firstelectrodes and/or the second electrodes so that ions are located in afirst region of the annular ion guiding region, wherein ions precess ormove in orbits about the inner cylindrical electrode arrangement; andthen

(ii) to apply one or more second voltages to one or more of the firstelectrodes and/or the second electrodes so that ions are orthogonallyaccelerated into a second region of the annular ion guiding region sothat ions pass along helical or spiral paths through the second regionof the annular ion guiding region in a first axial direction;

(iii) to apply one or more third voltages to one or more of the firstelectrodes and/or the second electrodes so that ions are reflected backin a second axial direction which is opposed to the first axialdirection; and

(iv) to determine the time of flight of ions passing through the annularion guiding region.

According to an aspect of the present invention there is provided amethod of mass analysing ions comprising:

causing ions to be located in a first region of an annular ion guidingregion, wherein ions precess or move in orbits about an innercylindrical electrode arrangement; and then

orthogonally accelerating ions into a second region of the annular ionguiding region so that ions pass along helical or spiral paths throughthe second region of the annular ion guiding region in a first axialdirection;

reflecting ions back in a second axial direction which is opposed to thefirst axial direction; and

determining the time of flight of ions passing through the annular ionguiding region.

A disadvantage of known orthogonal acceleration Time of Flight massanalysers is that they suffer from transmission loss due to divergenceof the ion beam in long flight path instruments resulting in overfillingof the available detector area. The divergence may arise from initialion beam conditions or from scattering at the grid boundaries.

The preferred embodiment of the present invention seeks to overcome thislimitation by confining ions in a stable radial orbit which isperpendicular to the direction of time of flight dispersion.

The preferred embodiment of the present invention has a number ofadvantages over conventional arrangements. The preferred embodiment, forexample, has increased resolution over single pass devices.

According to an embodiment the preferred Time of Flight mass analyseralso has high transmission in multipass mode due to gridlessconstruction of repeating flight path elements.

Another advantage of the preferred embodiment is that it has hightransmission due to stable radial confinement preventing overfilling ofthe detector (by divergence).

The preferred embodiment also has a high duty cycle of ion packetsinjected into instrument.

Another advantage of the preferred embodiment is that there is no use ofexternal ion deflectors to align ions with the instrument optic axis.Such deflectors introduce aberrations and complexity of construction.

A further advantage of the preferred embodiment is increased entranceenergy and consequential tolerance to surface charging of upstreamcomponents.

According to an embodiment the mass spectrometer may further comprise:

(a) an ion source selected from the group consisting of: (i) anElectrospray ionisation (“ESI”) ion source; (ii) an Atmospheric PressurePhoto Ionisation (“APPI”) ion source; (iii) an Atmospheric PressureChemical Ionisation (“APCI”) ion source; (iv) a Matrix Assisted LaserDesorption Ionisation (“MALDI”) ion source; (v) a Laser DesorptionIonisation (“LDI”) ion source; (vi) an Atmospheric Pressure Ionisation(“API”) ion source; (vii) a Desorption Ionisation on Silicon (“DIOS”)ion source; (viii) an Electron Impact (“EI”) ion source; (ix) a ChemicalIonisation (“CI”) ion source; (x) a Field Ionisation (“FI”) ion source;(xi) a Field Desorption (“FD”) ion source; (xii) an Inductively CoupledPlasma (“ICP”) ion source; (xiii) a Fast Atom Bombardment (“FAB”) ionsource; (xiv) a Liquid Secondary Ion Mass Spectrometry (“LSIMS”) ionsource; (xv) a Desorption Electrospray Ionisation (“DESI”) ion source;(xvi) a Nickel-63 radioactive ion source; (xvii) an Atmospheric PressureMatrix Assisted Laser Desorption Ionisation ion source; (xviii) aThermospray ion source; (xix) an Atmospheric Sampling Glow DischargeIonisation (“ASGDI”) ion source; and (xx) a Glow Discharge (“GD”) ionsource; (xxi) an Impactor ion source; (xxii) a Direct Analysis in RealTime (“DART”) ion source; (xxiii) a Laserspray Ionisation (“LSI”) ionsource; (xxiv) a Sonicspray Ionisation (“SSI”) ion source; (xxv) aMatrix Assisted Inlet Ionisation (“MAII”) ion source; and (xxvi) aSolvent Assisted Inlet Ionisation (“SAII”) ion source; and/or

(b) one or more continuous or pulsed ion sources; and/or

(c) one or more ion guides; and/or

(d) one or more ion mobility separation devices and/or one or more FieldAsymmetric Ion Mobility Spectrometer devices; and/or

(e) one or more ion traps or one or more ion trapping regions; and/or

(f) one or more collision, fragmentation or reaction cells selected fromthe group consisting of: (i) a Collisional Induced Dissociation (“CID”)fragmentation device; (ii) a Surface Induced Dissociation (“SID”)fragmentation device; (iii) an Electron Transfer Dissociation (“ETD”)fragmentation device; (iv) an Electron Capture Dissociation (“ECD”)fragmentation device; (v) an Electron Collision or Impact Dissociationfragmentation device; (vi) a Photo Induced Dissociation (“PID”)fragmentation device; (vii) a Laser Induced Dissociation fragmentationdevice; (viii) an infrared radiation induced dissociation device; (ix)an ultraviolet radiation induced dissociation device; (x) anozzle-skimmer interface fragmentation device; (xi) an in-sourcefragmentation device; (xii) an in-source Collision Induced Dissociationfragmentation device; (xiii) a thermal or temperature sourcefragmentation device; (xiv) an electric field induced fragmentationdevice; (xv) a magnetic field induced fragmentation device; (xvi) anenzyme digestion or enzyme degradation fragmentation device; (xvii) anion-ion reaction fragmentation device; (xviii) an ion-molecule reactionfragmentation device; (xix) an ion-atom reaction fragmentation device;(xx) an ion-metastable ion reaction fragmentation device; (xxi) anion-metastable molecule reaction fragmentation device; (xxii) anion-metastable atom reaction fragmentation device; (xxiii) an ion-ionreaction device for reacting ions to form adduct or product ions; (xxiv)an ion-molecule reaction device for reacting ions to form adduct orproduct ions; (xxv) an ion-atom reaction device for reacting ions toform adduct or product ions; (xxvi) an ion-metastable ion reactiondevice for reacting ions to form adduct or product ions; (xxvii) anion-metastable molecule reaction device for reacting ions to form adductor product ions; (xxviii) an ion-metastable atom reaction device forreacting ions to form adduct or product ions; and (xxix) an ElectronIonisation Dissociation (“EID”) fragmentation device; and/or

(g) one or more energy analysers or electrostatic energy analysers;and/or

(h) one or more ion detectors; and/or

(i) one or more mass filters selected from the group consisting of: (i)a quadrupole mass filter; (ii) a 2D or linear quadrupole ion trap; (iii)a Paul or 3D quadrupole ion trap; (iv) a Penning ion trap; (v) an iontrap; (vi) a magnetic sector mass filter; (vii) a Time of Flight massfilter; and (viii) a Wein filter; and/or

(j) a device or ion gate for pulsing ions; and/or

(k) a device for converting a substantially continuous ion beam into apulsed ion beam.

The mass spectrometer may further comprise a stacked ring ion guidecomprising a plurality of electrodes each having an aperture throughwhich ions are transmitted in use and wherein the spacing of theelectrodes increases along the length of the ion path, and wherein theapertures in the electrodes in an upstream section of the ion guide havea first diameter and wherein the apertures in the electrodes in adownstream section of the ion guide have a second diameter which issmaller than the first diameter, and wherein opposite phases of an AC orRF voltage are applied, in use, to successive electrodes.

BRIEF DESCRIPTION OF THE DRAWINGS

Various embodiments of the present invention will now be described, byway of example only, and with reference to the accompanying drawings inwhich:

FIG. 1 shows the principle of spatial focusing;

FIG. 2 shows ion velocity and phase space ellipses;

FIG. 3 illustrates Liouville's theorem;

FIG. 4 shows a W-shaped Time of Flight region in a conventional Time ofFlight mass analyser;

FIG. 5 shows an end view of a preferred Time of Flight mass analyser;

FIG. 6A shows ions confined in a stable orbit and FIG. 6B shows a pulsedvoltage being applied to a grid which is placed inside the analyserbetween the two cylinders;

FIG. 7A shows an embodiment and FIG. 7B shows another embodiment of thepresent invention;

FIG. 8A shows an embodiment wherein ions are initially confined, FIG. 8Bshows a parabolic potential being applied to one side of the ion path,FIG. 8C shows ions oscillating along a parabolic potential and FIG. 8Dshows the ions being transmitted to an ion detector;

FIG. 9A shows ions being confined initially, FIG. 9B shows ions beingorthogonally accelerated, FIG. 9C shows ions being detected by an iondetector located at the exit of a field free region, FIG. 9D shows anembodiment wherein ions experience a parabolic potential, FIG. 9E showsan embodiment wherein ions oscillate within a parabolic potential andFIG. 9F shows an embodiment wherein ions are transmitted to an iondetector located at the exit of a field free region;

FIG. 10 shows evolution of phase space in pre push state with beam stop;

FIG. 11 shows a further embodiment of the present invention comprising agridless geometry with pulsed voltages shown as dotted lines;

FIG. 12 shows a schematic of the geometry of a Time of Flight massanalyser which was modelled;

FIG. 13 shows a view of the co-axial geometry of a Time of Flight massanalyser which was modelled;

FIG. 14 shows a comparison of ion peaks due to an analytic system and aTime of Flight mass analyser according to an embodiment of the presentinvention;

FIG. 15 shows a comparison of time of flight peaks due to an analyticsystem and a Time of Flight mass analyser according to an embodiment ofthe present invention;

FIG. 16A shows a preferred embodiment of the present invention incross-section and shows an ion beam initially undergoing stable circularorbits prior to being orthogonally accelerated into an annular time offlight region, FIG. 16B shows conductive rings on a PCB substrate andFIG. 16C shows a microchannel plate ion detector which enables a radialpotential to be maintained across the surface of the ion detector;

FIG. 17 shows trajectory classifications;

FIG. 18 shows an effective potential;

FIG. 19 shows the inner limit of an orbit;

FIG. 20 shows radial motion as a function of T=t;

FIG. 21 shows orbital motion according to an embodiment;

FIG. 22A shows the trajectory of an ion injected into an annular ionguiding region without scanning the internal field and FIG. 22B showsthe trajectory of an ion injected into an annular ion guiding regionwith a higher energy and also without scanning the internal field;

FIG. 23A shows a preferred method of injecting ions into the annular ionguiding region by splitting the injection region into a first and secondsector and ensuring that ions initially experience a field free regionwhen they are injected into the first sector and FIG. 23B shows theresulting ion trajectories after ions have moved from the first sectorinto the second sector and a radial field is restored in the firstsector; and

FIG. 24A shows ions which have been injected into the mass analyserseparating rotationally and FIG. 24B shows ions which have been injectedinto the mass analyser separating rotationally at a later time.

DETAILED DESCRIPTION OF PREFERRED EMBODIMENT

An arrangement will now be described with reference to FIG. 5. FIG. 5shows an arrangement wherein a Time of Flight mass analyser is providedcomprising two coaxial cylindrical electrodes with an annular ionguiding volume therebetween.

According to the preferred embodiment ions are confined radially betweentwo coaxial cylinders which are held at different potentials Vouter andVinner. The ion beam (which is preferably a packet of ions containingthe different mass to charge ratio species to be analysed) is arrangedto approach the outer cylinder where either a hole or a gap throughwhich the ion beam may pass is preferably provided.

Ions entering the annular ion guiding volume preferably form stablecircular orbits by increasing the field between the inner and outercylinders once the ion beam has entered the device. In the absence ofany other fields once inside the cylinders the ions preferably remain inorbit but will disperse in the axial direction according to theirinitial axial velocities. This is shown in FIG. 6A.

Referring now to FIG. 6B, once the ions are confined in stable circularorbits a pulsed voltage is applied to a grid electrode which ispreferably placed inside the analyser between the two cylinders. Inorder to create the electric field functions required to achieve spatialfocussing the inner and outer cylinders are preferably segmented anddifferent voltages are preferably applied to each of the inner and outersegmented electrodes.

FIG. 6A shows how the inner and outer cylindrical electrodes may beaxially segmented according to an embodiment. According to the preferredembodiment the inner and outer cylindrical electrodes are axiallysegmented in all of the embodiments described below, although for easeof illustration only some of the following drawings may omit the axialsegmentation.

Referring again to FIG. 6B, the ions are orthogonally accelerated in anaxial direction and preferably continue to rotate around the centralelectrode set but at the same time preferably begin to move along theaxis of the Time of Flight mass analyser in a substantially helicalmanner.

It should be understood that time of flight dispersion only occurs inthe axial direction and that the ions are confined radially to preventtransmission losses. As a result, the two coordinates in the preferredcylindrical device are decoupled in their behaviour.

FIG. 6B illustrates a simple embodiment with four principal planes P1,P2, P3, P4 which are directly analogous to the principal planes in aWiley McLaren Time of Flight mass analyser as shown in FIG. 1. Spatialfocussing is achieved in the same principle. However, in the geometryaccording to the embodiment as shown in FIG. 6B, the stable orbits inthe radial direction prevent losses due to beam divergence and gridscattering at the grid boundaries.

A further advantage of the geometry according to the preferredembodiment is that when coupled to a pulsed packet of ions incoming tothe spectrometer the entire ion packet may be captured into a stableorbit and utilised. If ions are stored in an upstream RF device betweenspectrometer acquisition cycles (pushes) then essentially a 100% dutycycle is potentially achievable with the preferred geometry.

According to the embodiment shown in FIGS. 6A and 6B ions may still belost due to collisions with grid electrodes but the preferred embodimentadvantageously has substantially higher transmission than conventionalarrangements.

Other embodiments are also contemplated and will be described belowwhich do not utilise grid electrodes and which are therefore even moreadvantageous compared with conventional arrangements.

It should be noted that the application of an orthogonal accelerationelectric field or pulsing electric field after stable radial orbits areachieved is an important distinction over other known forms of massanalysers.

In particular, an Orbitrap® mass analyser is known wherein a packet ofions from outside the device is pulsed into the mass analyser usingdeflection devices to change the direction of the beam to the axis ofthe spectrometer. Such deflection devices cause aberrations in the timeof flight and distortions in the isochronous plane. These aberrationslimit the resolution of such devices such that very long flight timesare required before high resolutions can be achieved.

A particular advantage of the preferred embodiment is that theapplication of the acceleration field after stable orbits are achievednegates the need for deflection devices and enables resolutionperformances to be achieved in faster timescales similar to conventionalorthogonal acceleration Time of Flight mass analysers.

It is an advantage of radially confined coaxial cylinder Time of Flightmass analysers according to embodiments of the present invention thatlong flight paths are possible without losses due to beam divergencelosses. As such the preferred embodiment is ideally suited to multipassTime of Flight mass analyser geometries.

Various multipass geometries are contemplated and according to preferredembodiments contain a minimum number of grid electrodes in order toreduce losses at the principal planes.

FIGS. 7A and 7B show a preferred geometry according to an embodiment.According to this embodiment ions are injected and stabilised into oneside of an axially symmetric device before a parabolic potential isapplied along the length of the Time of Flight mass analyser. Theparabolic potential acts to accelerate ions towards the centre of thespectrometer. The form of parabolic potential well preferably allows theions to oscillate back and forth exhibiting simple harmonic motion. Themore passes that the ions experience before detection the greater theresolution of the instrument.

Advantageously, ions may be stored in an upstream ion trap. Ions may bemass selectively ejected from the ion trap to sequentially release knownmass ranges of ions to the analyser while storing others in thepopulation. In this way a high resolution mass spectrum covering theentire mass range may stitched together from segments of the smalleracquired mass range.

The evolution of phase space illustrated in FIG. 7B shows that theisochronous plane is found in the centre of the device substantially atthe bottom of the potential well. In fact there is a small deviationfrom the bottom which is a function of the inclination of the initialphase space ellipse but at typically envisaged device geometries this isa small effect.

According to an embodiment the ion detector may be placed or located ina region of the instrument where there is no axial field present.

According to an embodiment the ion detector may be located in an axialfield free region of the instrument as will now be discussed withreference to FIGS. 8A-8D. FIGS. 8A-8D show an embodiment incorporating acombination of a Wiley McLaren and parabolic potential well sections.Each of FIGS. 8A-8D illustrate a different time in the acquisition cycleof the instrument.

Ions are preferably extracted from a coaxial geometry Time of Flightmass analyser according to an embodiment of the present invention andwhich incorporates a two field Wiley McLaren type source. The ions areorthogonally accelerated into a field free region and pass along throughthe field free region. The ions then experience a parabolic potentialgradient (half a well) as shown in FIGS. 8A and 8B.

While ions are inside the parabolic section as shown in FIG. 8B, theother half of the well is preferably switched ON as shown in FIG. 8C andthe ions are preferably allowed to oscillate for a desired number oftimes to increase the effective flight path of the instrument beforeejection towards the ion detector as shown in FIG. 8D.

It will be noted from FIG. 8D that the isochronous plane is no longer atthe base of the potential well. This is due to the amount of field freeregion required to bring the ion beam into isochronous spatial focusbeing exactly the distance between P3 and the detector in this case.Only half of the field free region is taken up on its outward trip tothe right hand half of the parabolic potential well. When this half isswitched OFF the ions of interest fly the remaining required field freeregion to be brought into isochronous spatial focus. It is thecombination of a geometry that allows a portion of field free regionalong with a parabolic potential well allowing simple harmonic motionthat makes such a multipass instrument possible. Without such a fieldfree region there would be nowhere to position the detector withoutdistortion of the electric fields.

If a higher degree of spatial focussing is required then the pulsedparabolic potential well may be contained in a field free region of areflectron Time of Flight mass analyser. This further embodiment willnow be described with reference to FIGS. 9A-9F.

The principle of operation according to this embodiment is similar tothat described above with reference to FIGS. 8A-8D, but also includes asingle pass mode as shown in FIGS. 9A-9C which does not include thepulsing of the parabolic potential well. Such a mode of operation isparticularly useful when faster acquisition at lower resolution isrequired. The higher degree of spatial focussing enables the veryhighest possible resolution to be achieved for the lowest number ofpasses of the potential well.

As will be understood by those skilled in the art, the mass range of theTime of Flight mass analyser will reduce with the number of round tripsmade of the harmonic potential well. If the analyser is traversed anumber of times N then the available mass range reduces with this valuein the relation:

m _(max) /m _(min)=(N/(N−1))²  (1)

This could be seen as a disadvantage but the reduced mass range may beexploited by optimising the phase space conditions of the beam enteringthe analyser prior to acceleration. Generally ion beams are conditionedby a combination of RF focussing elements such as ring stacks,quadrupoles or higher order multipoles and electrostatic elements suchas lenses and grids. Optimisation of initial conditions involvesconfining the beam closely to the optic axis. Most often the beam isconfined tightly to the optic axis by using an RF only quadrupole butthis device has a strong mass dependence in its focussing action. Thismeans that while ions of a certain mass may be effectively squeezed tothe optic axis, ions of higher mass are less strongly confined and ionsof lower mass may be unstable in the device or pick up excessive energyfrom the RF field.

Accordingly, the transmission of a limited mass range to the analyserdetermined by the number of round trips enables optimisation of phasespace characteristics for the masses contained within the reduced massrange for best possible instrument resolution.

WO 2011/154731 (Micromass) describes how an ion beam may be expanded tooptimise phase space conditions in a conventional two stage WileyMcLaren instrument. WO 2011/154731 discloses how the limiting turnaroundtime aberration in a properly expanded beam scales with the accelerationpotential difference seen by the beam rather than the electric field inthat region.

The preferred embodiment of the present invention allows for perfectaberration free beam expansion by allowing a packet of ions which hasbeen injected into the analyser to rotate around the central electrodefor as long as desired before orthogonal acceleration. The analyser isentirely field free in the axial direction before the acceleration pulseis applied. This allows free expansion due to the ions initial velocity.The process is essentially similar to having a variable flight distancefrom the transfer optics to the Time of Flight mass analyser. As theions rotate and expand the phase space ellipse becomes more elongatedand the beam picks up more of the acceleration potential when it isapplied. So long as the analyser has a good enough spatial focussingcharacteristic then resolution will improve as the beam is allowed toexpand. By prudent placing of an aperture plate (or beam stop) withinthe Time of Flight mass analyser acceleration region the maximum sizethat the beam can axially expand to may be limited to the spatialfocussing characteristic of the analyser. If once the position of thebeam stop is reached the ions are allowed to rotate further prior toacceleration, the phase space will take the form of a truncated ellipsegetting thinner in the velocity direction the longer the rotation takes.This is illustrated in FIG. 10.

By varying the delay time greater resolutions may be reached at theexpense of some ion losses. This may be thought of as analogous to thetechnique of delayed extraction in MALDI instruments whereby the ionsare allowed to leave the target plate and adopt positions correlatedwith their initial velocity in the ion source prior to extraction intothe analyser. The correlation of ion velocity and position is very highdue to the desorption event being defined by a plane. The delayedextraction according to embodiments of the present invention does nothave such complete position/velocity correlation but nevertheless highdegrees of ion focussing can be achieved and can be further optimisedfor the mass range of interest being injected into the analyser i.e. thedelay time may be set to allow the central mass in the injected range tojust reach the position of the beam stop (i.e. fill to the level beforespatial focussing degrades the resolution) before extraction takesplace.

U.S. Pat. No. 546,495 (Cornish) discloses using a curved fieldreflectron to bring ions of wide kinetic energy difference created bypost source decay (“PSD”) in MALDI Time of Flight mass analyserinstruments. According to an embodiment of the present invention such anarrangement may be utilised to give a first acceleration stage with goodspatial focussing and the field free region necessary for suitablepositioning of the ion detector.

As mentioned above, further embodiments of the present invention arecontemplated wherein no grid electrodes are utilised. The radialconfinement afforded by the stable orbit means that the ions adopt anarrow range of radial positions. This means that it is possible to makethe entire system gridless and still maintain good spatial focussingwhile avoiding the disturbance in the axial electric fields and ionlosses that these elements introduce. Gridless Time of Flight massanalysers without the radial stability of the present invention sufferfrom the defocusing effect of the electric fields caused by overfillingof the ion optical elements ultimately limiting device sensitivity andresolution.

An example of a gridless electrode arrangement according to anembodiment of the present invention is shown in FIG. 11. In this casethe electric potentials to be pulsed are shown as dotted lines but theorder and nature of their pulsing and the phase space evolution issimilar to that described with reference to FIGS. 8A-8D. Elimination ofgrid electrodes has a further advantage in that is simplifies the methodof construction as the device may consist of two concentric segmentedcylinders assembled independently rather than having common mechanicalparts (e.g. grid electrodes) in contact with both outer and innerassemblies within the internal space between the two.

Modelling of a coaxial Time of Flight mass analyser according to anembodiment of the present invention was performed. Results from ananalytic system were compared with resulting from a SIMION® simulationof a coaxial Time of Flight mass analyser geometry according to thepreferred embodiment.

FIG. 12 shows the Time of Flight mass analyser geometry used for themodelling where the mean ion start plane is at the centre of the pusherregion of length L1=40 mm. The voltage V1 equals 1000 V.

The acceleration region L2 was set at 50 mm and voltage V2 was set at5000 V. The various regions are bounded by grid electrodes while theparabolic regions are not grid bounded. The distance Lp was modelled asbeing 99 mm and Vp was set at 10,000 V. The left hand parabola (LHP) isramped up after ions are in the right hand parabola (RHP). The RHP isramped down while the ions are in the LHP after the desired number ofpasses have occurred.

In the python model the total field free distance is a variable that canbe solved while in the SIMION® simulation the ions are recorded at afixed detector plane distance. These ions can then be imported into thepython model and can be solved for a variable field free region, henceboth approaches can be brought into focus.

FIG. 13 shows the co-axial geometry used in the SIMION® modelling. Theradius of the inner cylinder Rin was set at 10 mm and the outer cylinderradius Rout was set at 20 mm. Accordingly, Rgap equals 10 mm.

The axial electrode segments were arranged to be 1 mm wide with 1 mmgaps therebetween. Grid electrodes were modelled as being locatedbetween segments and voltages were modelled as being applied to givelinear voltage drops across the first two regions and quadraticpotentials in the parabolic regions.

A potential difference was applied between the inner and the outercylinders to give radial confinement. In the results presented +650 Vwas applied to the outer cylinder and the inner cylinder is at the samepotential as the grids.

For singly charged ions having a mass to charge ratio of 500 with 500 eVof radial KE and +650 V being applied to the outer cylinder gives goodradial confinement. Significant radial KE is required to retainconfinement within the parabolic regions which give radial divergence.

For the first system the initial ion conditions were 1 mm position delta(+/−0.5 mm), Gaussian velocity spread with a 5 m/s standard deviation,no initial ion drift, 8 passes through the parabolic regions (1 pass isinto then back out of a single parabola) and 10 kV on the parabolas. Theresults are shown in FIG. 14.

The total FFR is 1203 mm for the analytic system with 70.712 μs drifttime. For the Time of Flight mass analyser according to the preferredembodiment the FFR is 1619 mm with a 79.617 μs drift time. Theresolution performance of the Time of Flight mass analyser according toan embodiment of the present invention is comparable with the analyticsystem.

If the initial phase space is set smaller and more passes through theparabolas are allowed then the resolution according to the preferredembodiment is further improved. For this system the initial ionconditions were 0.2 mm position delta (+/−0.1 mm), Gaussian velocityspread with a 1 m/s standard deviation, no initial ion drift, 32 passesthrough the parabolic regions (1 pass is into then back out of a singleparabola) and 10 kV on the parabolas.

The analytic system had a FFR of 1203 mm whereas the FFR according tothe preferred system was 1630 mm. The resolution of the analytic systemwas 189,000 compared with 170,000 resolution for system according to thepreferred embodiment.

It will be appreciated that a Time of Flight mass analyser having apotential resolution of 170,000 represents a very significant advance inperformance compared with current state of the art commercial Time ofFlight mass analysers.

Although the analytic and SIMION® systems are not in exact agreement itis apparent that the preferred embodiment is able to achieve about 90%of the analytic resolution. The flight time for the analytic system was191 μs whereas the flight time for the preferred embodiment was 200 μsas shown in FIG. 15. In both cases the flight time is not excessivelylong (12 GHz TDC detector).

Unique Path Through Multipass Co-Axial Cylinder TOF

It is a distinct disadvantage of known multipass Time of Flight massspectrometers that the mass range reduces as the number of passesthrough the analyser increases. This is because it is impossible todistinguish a faster lower mass ion from a slower higher mass ion whichmay have made a lower number of analyser passes. Consequently, only asmall subset of the mass range to be analysed may be injected into thespectrometer so as to avoid aliasing at the chosen number of roundtripsof the analyser.

An important feature of a preferred embodiment of the present inventionis that a unique path is provided for all ions of all masses so that theentire mass range may be covered in a single acquisition cycle. Thepresent invention therefore represent a significant improvement in theart.

Ions are preferably injected into a segmented coaxial cylinder Time ofFlight mass spectrometer using a switched sector with no axial field.The ions are preferably injected such that they describe circulartrajectories in the cylindrical pusher region of the spectrometer. Theions are allowed to rotate around the central electrode set and expandto fill the pusher so that they see a large voltage drop when theextraction field is subsequently activated to minimise the turnaroundtime.

The extraction field is preferably activated to give an axial and radialimpetus to the circularly rotating ion beam. The axial field ispreferably created using a quadratic potential function so that the ionspreferably exhibit substantially simple harmonic motion in thez-direction (the direction of Time of Flight analysis). The radial fieldis also pulsed at the same time such that the ions no longer describeperfect circular orbits but rather they begin to describe eccentricorbits which allow a variation in the radial position as they traversethe analyser. The ions preferably exhibit radial oscillations which areindependent in frequency to those in the axial direction. In otherembodiments the ions may describe unstable trajectories sending them inan inward or outward direction. In either case it is desired that theions describe a unique path in the analyser describing a number ofoscillations in the z direction before they strike an ion detector whichis preferably placed inside the analyser perpendicular to the z axis andat a position preferably corresponding to the isochronous plane.

It is an advantage of the present invention that the ions are free toexpand in the angular φ coordinate as the ion detector may take the formof an annulus so capturing all ions regardless of φ i.e. no constraintor control of the ions is preferably required in the φ direction.

The segmented construction of the device and the inherent decoupling ofthe applied axial and radial field components allows for independentcontrol of radial and axial motion which is not possible usingcylindrical electrodes of solid construction that can only satisfy theboundary conditions for a fixed ratio of radial to axial field strength.

A particularly preferred embodiment of the present invention is shown inFIG. 16A. Ions are injected between an outer segmented electrode set O1and an inner segmented injection electrode set I1 where they are allowedto rotate and axially expand by virtue of their thermal velocity (fromthe ion source).

Pulsed radial and axial fields are then preferably applied and move theion beam into the central portion of the analyser where they oscillatewith radial amplitude δR and axial amplitude δz. The injection segmentof the analyser may be narrower than that of the central part so as tominimise aberrations on entry to the switched sector region. Accordingto an embodiment the axial field is preferably raised further when theions first enter the main body of the device so as to prevent the ionsfrom striking the narrower injection region due to radial oscillationimparted by the pulsed component of the radial field. This gives a smallmass dependence in Time of Flight trajectory but does not change theposition of the isochronous plane P1. In order to control the fringefields at the ends of the device and at the position of the ion detectorsome optical components may be incorporated that closely follow theboundary conditions of the desired analytical field F1, F2 and thesurfaces of the ion detector D. These may take the form of conductiverings on PCB substrates to which are applied the correct voltage (FIG.16B). In the case of a microchannel plate detector its resistive naturemay be utilised and the boundary conditions may be satisfied by applyingradial voltages V1 and V2 between its inner and outer regions as shownin FIG. 16C.

According to the preferred embodiment the ions preferably miss the iondetector for a predetermined number of passes by controlling thefrequency, amplitude and phasing of the radial oscillations.

Derivation of Equations of Motion

The equations of motion may be derived using the Lagrangian formulation.The Lagrangian is the difference between the kinetic energy and thepotential energy. In cylindrical polar coordinates with atime-independent and cylindrically symmetric potential this is:

L=T−V=½m[(r{dot over (φ)})² +{dot over (r)} ² +ż ² ]−qU(r,z)  (2)

The three Euler-Lagrange equations are:

$\begin{matrix}{{{\frac{\partial}{\partial t}\frac{\partial L}{\partial{\overset{.}{q}}_{i}}} - \frac{\partial L}{\partial q_{i}}} = 0} & (3)\end{matrix}$

one for each of the three q_(i) cylindrical coordinates r, φ and z. Forthe class of potentials that are of interest:

$\begin{matrix}{{m\left( {\overset{¨}{r} - {r\; {\overset{.}{\varphi}}^{2}}} \right)} = {{- q}\frac{\partial{U\left( {r,z} \right)}}{\partial r}}} & (4) \\{{m\overset{¨}{z}} = {{- q}\frac{\partial{U\left( {r,z} \right)}}{\partial r}}} & (5) \\{{\frac{\partial}{\partial t}\left( {{mr}^{2}\overset{.}{\varphi}} \right)} = 0} & (6)\end{matrix}$

Some general conclusions can be drawn. Firstly, the motion in the zdirection is decoupled from orbital motion in the (r, φ) plane when thepotential can be written in the form:

U(r,z)=U _(r)(r)+U _(z)(z)  (7)

Second, Eqn. 6, which expresses conservation of angular momentum L_(z)for motion around the z axis can be rewritten as:

$\begin{matrix}{{\overset{.}{\varphi}(t)} = \frac{L}{{mr}^{2}(t)}} & (8)\end{matrix}$

which implies that unless φ is constant (L_(z)=0 corresponds to pureradial motion), or the radius is constant (pure circular motion), thenmotion in r and φ is coupled. When Eqn. 7 is satisfied, the problemreduces to the differential equations for the radial variable andvariable which are respectively:

$\begin{matrix}{{m\left( {\overset{¨}{r} - \frac{L_{z}^{2}}{m^{2}r^{3}}} \right)} = {{- q}\frac{\partial U_{r}}{\partial r}}} & (9) \\{{m\overset{¨}{z}} = {{- q}\frac{\partial U_{z}}{\partial r}}} & (10)\end{matrix}$

and given r(t), φ(t) can be obtained by integrating Eqn. 8.

The radial equation of motion Eqn. 9 can be reformulated as follows:

$\begin{matrix}{{m\overset{¨}{r}} = {{- q}\frac{\partial{\overset{\sim}{U}}_{r}}{\partial r}}} & (11)\end{matrix}$

where the effective radial potential includes a centrifugal term:

$\begin{matrix}{{{\overset{\sim}{U}}_{r}(r)} = {{U_{r}(r)} + \frac{L_{z}^{2}}{2{mqr}^{2}}}} & (12)\end{matrix}$

The energy E_(rφ) is conserved:

E _(rφ)=½m{dot over (r)} ² +qŨ _(r)(r)  (13)

An initial condition that is of particular interest occurs when ionsattain their initial velocity by acceleration through a potential dropΔU. For simplicity, it is assumed that the injection radius is R₀ andthe initial radial velocity r(0)=0. In this case the angular momentumsatisfies:

L _(z) ²=2mqR ₀ ² ΔU  (14)

so that:

$\begin{matrix}{{{\overset{\sim}{U}}_{r}(r)} = {{U_{r}(r)} + \frac{R_{0}^{2}\Delta \; U}{r^{2}}}} & (15)\end{matrix}$

which is explicitly independent of q and m. It will be noted thatunusually for a potential, Ũ, changes with the initial conditions (R₀and ΔU or, equivalently, the orbital angular momentum L_(z)). However,for fixed U_(r)(r), the mapping:

$\begin{matrix}{\left. R_{0}\rightarrow R_{0}^{\prime} \right.,\left. {\Delta \; U}\rightarrow{\Delta \; U\frac{R_{0}^{2}}{R_{0}^{\prime 2}}} \right.} & (16)\end{matrix}$

leaves the angular momentum and the effective potential unchanged.Stable circular orbits may be obtained when it is possible to choose thequantity R₀ ²ΔU in such a way that r=R₀ is a minimum of the effectivepotential Ũ_(r)(r).

Orbital Differential Equation

A differential equation for the orbit r(φ) can also be obtained. Firstfrom Eqn. 8 the following can be obtained:

$\begin{matrix}{{\; \varphi} = {\frac{L_{2}}{{mr}^{2}}{t}}} & (17)\end{matrix}$

and thence:

$\begin{matrix}{\frac{}{t} = {\frac{L_{z}}{{mr}^{2}}\frac{}{\varphi}}} & (18)\end{matrix}$

which enables the time derivative to be eliminated in favour of a φderivative:

$\begin{matrix}{{m\overset{¨}{r}} = {{m\frac{^{2}r}{t^{2}}} = {{\frac{L_{z}^{2}}{m}\frac{1}{r^{2}}\frac{}{\varphi}\left( {\frac{1}{r^{2}}\frac{r}{\varphi}} \right)} = {{- 2}{qR}_{0}^{2}\Delta \; {Uu}^{2}\frac{^{2}u}{\varphi^{2}}}}}} & (19)\end{matrix}$

where Eqn. 14 has been used and introduced the new variable u=I/r.Noting that:

$\begin{matrix}{\frac{}{r} = {{- u^{2}}\frac{}{u}}} & (20)\end{matrix}$

the equation of motion Eqn. 11 becomes a differential equation for theorbit:

$\begin{matrix}{\frac{^{2}u}{\varphi^{2}} = {\frac{- 1}{2R_{0}^{2}\Delta \; U}\frac{{{\overset{\sim}{U}}_{r}\left( {l\text{/}u} \right)}}{u}}} & (21)\end{matrix}$

With initial conditions, if the effective potential Ũ_(r) is independentof q and m then the same will be true of u(φ) and therefore r(φ).

Time Dependence and Orbital Period

Ions are initially set up in a circular orbit. The times at whichbounded orbits reach various radii are of interest. For central forcesthe orbit is symmetric about each of its turning points, and the firsttraversal from r=R_(max) to r=R_(min) (or vice-versa) enables relevantequations to be derived. Furthermore t(r) is single value in this range.

Starting from the energy conservation Eqn. 13 then since the startingpoint is a circular orbit and a pulse in the field at t=0 then theinitial conditions will be r(0)=R_(max) and {dot over (r)}(0)=0.Alternatively, it is possible to start at r=R_(min) but the conclusionswould be essentially the same. The following equation can therefore bewritten:

qŨ _(r)(R _(max))=½m{dot over (r)} ² +gŨ _(r)(r)  (22)

which can be rearranged as:

$\begin{matrix}{\overset{.}{r} = {- \sqrt{\frac{2q}{m}\left( {{{\overset{\sim}{U}}_{r}\left( R_{\max} \right)} - {{\overset{\sim}{U}}_{r}(r)}} \right)}}} & (23)\end{matrix}$

where the negative square root is taken since it is known that {dot over(r)}<0 in the part of the trajectory that is relevant. This may berewritten in the following form:

$\begin{matrix}{{t} = {{- \sqrt{\frac{m}{2q}}}\frac{r}{\sqrt{\left( {{{\overset{\sim}{U}}_{r}\left( R_{\max} \right)} - {{\overset{\sim}{U}}_{r}(r)}} \right)}}}} & (24)\end{matrix}$

which can be integrated to give:

$\begin{matrix}{{t(r)} = {{\sqrt{\frac{m}{2q}}{\int_{r}^{R_{\max}}{{r\left( {{{\overset{\sim}{U}}_{r}\left( R_{\max} \right)} - {{\overset{\sim}{U}}_{r}(r)}} \right)}^{{- 1}/2}}}} \equiv {\sqrt{\frac{m}{q}}{\tau (r)}}}} & (25)\end{matrix}$

where for convenience q and m have been introduced and the independentfunction τ(r):

$\begin{matrix}{{\tau (r)} = {\frac{1}{\sqrt{2}}{\int_{r}^{R_{\max}}{{r\left\lbrack {{{\overset{\sim}{U}}_{r}\left( R_{\max} \right)} - {{\overset{\sim}{U}}_{r}(r)}} \right\rbrack}^{{- 1}/2}}}}} & (26)\end{matrix}$

The period of the radial orbit is the time taken to reach R_(min) andreturn to R_(max) which is:

$\begin{matrix}{T_{r} = {{2{t\left( R_{\min} \right)}} = {2\sqrt{\frac{m}{q}}{\tau \left( R_{\min} \right)}}}} & (27)\end{matrix}$

Unfortunately, for the class of potentials that are of interest, thisintegral cannot be performed analytically. However, numerical solutionsmay be obtained in a straightforward manner.

Decoupled Solutions of Laplace's Equation

It is desired to find the general solution of Laplace's equation withcylindrical symmetry and the constraint that the field at fixed radius ris quadratic in the axial direction z.

Laplace's equation in cylindrical polar coordinates may be written asfollows:

$\begin{matrix}{{\nabla^{2}{U\left( {r,\varphi,z} \right)}} = {{\left( {{\frac{1}{r}\frac{\partial}{\partial r}r\frac{\partial}{\partial r}} + {\frac{1}{r^{2}}\frac{\partial^{2}}{\partial\varphi^{2}}} + \frac{\partial^{2}}{\partial z^{2}}} \right){U\left( {r,\varphi,z} \right)}} = 0}} & (28)\end{matrix}$

Since solutions with cylindrical symmetry are desired the angulardependence can be dropped to give (for all φ):

$\begin{matrix}{{\left\lbrack {{\frac{1}{r}\frac{\partial}{\partial r}r\frac{\partial}{\partial r}} + \frac{\partial^{2}}{\partial z^{2}}} \right\rbrack {U\left( {r,z} \right)}} = 0} & (29)\end{matrix}$

A solution of the form is desired:

U(r,z)=a(r)z ² +b(r)  (30)

which is quadratic in z for fixed r. Substituting this into Eqn. 29gives:

$\begin{matrix}{{{z^{2}\frac{1}{r}\frac{\partial}{\partial r}r\frac{\partial}{\partial r}{a(r)}} + {2{a(r)}} + {\frac{1}{r}\frac{\partial}{\partial r}r\frac{\partial}{\partial r}{b(r)}}} = 0} & (31)\end{matrix}$

In order for this equation to be satisfied for all values of z the firstterm must vanish:

$\begin{matrix}{{z^{2}\frac{1}{r}\frac{\partial}{\partial r}r\frac{\partial}{\partial r}{a(r)}} = 0} & (32)\end{matrix}$

which can be integrated directly to give:

$\begin{matrix}{{a(r)} = {{a_{0}{\ln \left( {r/r_{0}} \right)}} + \frac{k}{2}}} & (33)\end{matrix}$

wherein r₀ is an arbitrary constant with dimensions of length which isintroduced to keep the argument of the logarithm explicitydimensionless. Substituting back into Eqn. 31 yields:

$\begin{matrix}{{\frac{\partial}{\partial r}r\frac{\partial}{\partial r}{b(r)}} = {{{- 2}a_{0}r\; {\ln \left( {r/r_{0}} \right)}} - {kr}}} & (34)\end{matrix}$

which can be integrated once more to give:

$\begin{matrix}{{\frac{\partial}{\partial r}{b(r)}} = {{a_{0}{r\left\lbrack {\frac{1}{2} - {\ln \left( {r/r_{0}} \right)}} \right\rbrack}} - {\frac{k}{2}r} + {b_{0}/r}}} & (35)\end{matrix}$

and again:

$\begin{matrix}{{b(r)} = {{\frac{a_{0}r^{2}}{2}\left( {1 - {\ln \left( {r/r_{0}} \right)}} \right)} - {\frac{k}{4}r^{2}} + {b_{0}{\ln \left( {r/r_{0}} \right)}} + b_{1}}} & (36)\end{matrix}$

The general solution may be written:

$\begin{matrix}{{U\left( {r,z} \right)} = {{\frac{k}{2}\left( {z^{2} - {r^{2}/2}} \right)} + {b_{0}{\ln \left( {r/r_{0}} \right)}} + b_{1} + {a_{0}\left\lbrack {{z^{2}{\ln \left( {r/r_{0}} \right)}} + {\frac{r^{2}}{2}\left( {1 - {\ln \left( {r/r_{0}} \right)}} \right)}} \right\rbrack}}} & (37)\end{matrix}$

Setting a₀=0 so that the axial motion is decoupled from motion in the r,φ plane, then the potential is:

$\begin{matrix}{{U\left( {r,z} \right)} = {{\frac{k}{2}\left( {z^{2} - {r^{2}/2}} \right)} + {b_{0}{\ln \left( {r/r_{0}} \right)}} + b_{1}}} & (38)\end{matrix}$

with a unique z-independent stationary point in the radial direction at:

$\begin{matrix}{R_{m} = \sqrt{\frac{2b_{0}}{k}}} & (39)\end{matrix}$

which is a maximum for k>0. This field can approximated using a seriesof closely spaced (in z) pairs of coaxial annular electrodes ofarbitrary outer and inner radius R₁ and R₂. The potentials that must beapplied to the electrodes at axial position z are:

$\begin{matrix}{{{U_{1}(z)} = {{\frac{k}{2}\left( {z^{2} - {R_{1}^{2}/2}} \right)} + {b_{0}{\ln \left( {R_{1}/r_{0}} \right)}} + b_{1}}}{{U_{2}(z)} = {{\frac{k}{2}\left( {z^{2} - {R_{2}^{2}/2}} \right)} + {b_{0}{\ln \left( {R_{2}/r_{0}} \right)}} + b_{1}}}} & (40)\end{matrix}$

There is no mathematical constraint on the k, b₀, b₁ or consequentlyR_(m) that can be produced in this way. The equations of motioncorresponding to the potential Eqn. 37 are:

$\begin{matrix}{\left( {\overset{¨}{r} - {r\; {\overset{.}{\varphi}}^{2}}} \right) = {\frac{q}{m}\left\lbrack {{\frac{k}{2}r} - \frac{b_{0}}{r}} \right\rbrack}} & (41) \\{\overset{¨}{z} = {{- \frac{qk}{m}}z}} & (42) \\{{\frac{\partial\;}{\partial t}\left( {r^{2}\overset{.}{\varphi}} \right)} = 0.} & (43)\end{matrix}$

Axial Motion

When k=0, Eqn. 42 describes simple harmonic motion in the z direction.The solution is well known. For an ion with initial position z(0) andz-velocity z(0):

$\begin{matrix}{{z(t)} = {{{z(0)}\cos \; \omega_{z}t} + {\frac{\overset{.}{z}(0)}{\omega_{z}}\sin \; \omega_{2}t}}} & (44)\end{matrix}$

where the angular frequency ω_(z)=√{square root over (qk/m)}. The periodis T=2π/ω_(z)

Circular Orbits

To obtain circular orbits (ignoring axial motion) it is required that{umlaut over (r)}={dot over (r)}=0. From Eqn. 43 it may be inferred that{umlaut over (φ)}=0 which implies that these trajectories have constantangular velocity with, from Eqn. 41:

$\begin{matrix}{{\overset{.}{\varphi}}^{2} = {\frac{q}{m}\left\lbrack {\frac{b_{0}}{R_{0}^{2}} - \frac{k}{2}} \right\rbrack}} & (45)\end{matrix}$

for a circular orbit of radius R₀. This expression is valid as long asR<R_(m).

The General Orbit

To treat more general orbits the effective radial potential Eqn. 15 forthe particular potential Eqn. 38 may be considered. By choosing {dotover (r)}(0)=0 the trajectory may be started at a radial turning pointor stationary point. Ignoring irrelevant constant (or purely zdependent) terms:

$\begin{matrix}{{{\overset{\sim}{U}}_{r}(r)} = {{{- \frac{k}{4}}r^{2}} + {b_{0}{\ln \left( {r/r_{0}} \right)}} + \frac{R_{0}^{2}\Delta \; U}{r^{2}}}} & (46) \\{\frac{\partial{\overset{\sim}{U}}_{r}}{\partial r} = {{{- \frac{k}{2}}r} + \frac{b_{0}}{r} - {2\frac{R_{0}^{2}\Delta \; U}{r^{3}}}}} & (47)\end{matrix}$

and therefore stationary points at R_(s) satisfying:

$\begin{matrix}{{{{{- \frac{k}{2}}R_{S}^{4}} + {b_{0}R_{S}^{2}} - {2\; R_{0}^{2}\Delta \; U}} = 0.}{or}} & (48) \\{R_{S \pm}^{2} \equiv {\frac{b_{0}}{k}\left( {\pm \sqrt[2]{1 - \frac{4\; k\; R_{0}^{2}\Delta \; U}{b_{0}^{2}}}} \right)}} & (49)\end{matrix}$

which has two distinct solutions as long as:

b ₀>2√{square root over (kΔU)}R ₀  (50)

taking k, b₀, ΔU>0. The limiting behaviour of the effective potentialEqn. 46 is:

$\begin{matrix}{{{\lim\limits_{r\rightarrow 0}{\overset{\sim}{U}}_{r}} = {\frac{R_{0}^{2}}{r^{2}}\Delta \; U}}{{\lim\limits_{r\rightarrow\infty}{\overset{\sim}{U}}_{r}} = {{- \frac{k}{4}}r^{2}}}} & (51)\end{matrix}$

which is large positive for small r and large negative for large r sothat the stationary points R_(S−) and R_(S+) defined by Eqn. 49 must bea minimum and maximum respectively. Consequently, the condition Eqn. 50is necessary for the existence of bounded orbits which must also satisfyr<R_(S+). The radius at perigree and apogee of bounded orbits may bedenoted as R_(min) and R_(max) respectively. It is apparent that:

Ũ _(r)(R _(min))=Ũ _(r)(R _(max)) and R _(max) =R ₀  (52)

The nature of the trajectory with starting point r=R₀ is partlydetermined by the sign of the gradient of the effective potential Eqn.47 at r=R₀. In particular, if the gradient (times R₀):

$\begin{matrix}{{{R_{0}{{\overset{\sim}{U}}_{r}^{\prime}(r)}}_{r = R_{o}}} = {b_{0} - {2\; \Delta \; U} - {\frac{k}{2}R_{0}^{2}}}} & (53)\end{matrix}$

is positive, the starting point is a radial maximum and the trajectorymust be bounded. If the gradient is negative, then the starting point isa radial minimum and the orbit is bounded if (and only if) R_(O)≦R_(S+)and Ũ_(r)(R_(O))≦Ũ_(r)(R_(S+)). If the gradient is zero then theconditions for a circular orbit are satisfied (stable if R_(O)=R_(S−)and unstable if R_(O)=R_(S+)).

FIG. 17 shows the trajectories produced at points in the (R₀, b₀) planefor fixed k and ΔU. In the regions above the straight line b₀>2√{squareroot over (kΔU)}R₀ the potential has two stationary points (a minimumand a maximum). In the region above the curved line

$b_{0} > {{2\; \Delta \; U} + {\frac{k}{2}R_{0}^{2}}}$

the trajectory is bounded and starts at a radial maximum. The straightand curved lines meet at the point:

$\begin{matrix}{{R_{0} = {2\sqrt{\frac{\Delta \; U}{k}}}},{b_{0} = {4\; \Delta \; U}}} & (54)\end{matrix}$

which corresponds to an unstable circular trajectory at an inflectionpoint of the effective potential. The boundary between bound and unboundtrajectories in the region below R₀=R_(S−) is not shown on this plot.FIG. 17 shows trajectory classification for k=8×10⁴ Vm⁻² and ΔU=1000 V.Above the straight line the effective potential has a minimum. Above thecurved line the starting point is the radial maximum of a boundtrajectory.

An example of an effective potential corresponding to a bound trajectoryis shown in FIG. 18 with parameters k=8×10⁴ Vm⁻², R₀=R_(max)=0.075 m,b₀=5000 V and ΔU=1000 V. The stationary points of the potential are atR_(S−)=0.048 m and R_(S+)=0.350 m (off scale). R_(min)=0.034 m. Startingat r=R₀=R_(max) ions oscillate between R_(min) and R_(max).

FIG. 19 shows R_(min) as a function of b₀ for the orbit corresponding tok=8×10⁴ Vm⁻² with ΔU=1000 V and R₀=0.075 m. As b₀ increases (and with itthe attractive part of the potential), R_(min) decreases. It will benoted that the trajectories towards the right of this plot are highlyeccentric.

Three Dimensional Trajectories

It is desired to find a set of trajectories which oscillate back andforth axially through the mass spectrometer, missing the ion detectorfor a predetermined number of passes N−1≧0 and hit the ion detector onthe final pass N. Considering the axial equation of motion Eqn. 44 withthe added assumption that the ions start with no axial velocity i.e.z(0)=0. For brevity we shall also write Z₀=z(0).

z(t)=Z ₀ cos ω_(z) t  (55)

This orbit passes the ion detector at times:

$\begin{matrix}{{t_{n} = \frac{\left( {{2\; n} - 1} \right)\pi}{2\; \omega_{z}}},{n = 1},{2\mspace{14mu} \ldots}} & (56)\end{matrix}$

It is assumed for simplicity that the axial extent of the ion detectorW_(d) is small compared with the axial extent of the orbit i.e.W_(d)<<2Z₀. As ions pass the ion detector the ions have velocityz=±Z₀ω_(z) so the time taken to pass the ion detector is approximately:

$\begin{matrix}{{\Delta \; T_{d}} = {\frac{W_{d}}{Z_{0}\omega_{z}} = {\frac{W_{d}}{Z_{0}\sqrt{k}}\sqrt{\frac{m}{q}}}}} & (57)\end{matrix}$

It is desired to find radial trajectories that satisfy r(t)>H_(d) for|t−t_(n)|<ΔT_(d)/2 when n<N and r(t)<H_(d) for t=t_(N). It is desired toknow the times at which the radial orbit reaches the critical radiusr=H_(d).

Ignoring initially the finite axial extent of the ion detector, it isnoted that R_(min) is achieved at odd multiples of one half of theradial period, while z=0 occurs at odd multiples of one quarter of theaxial period. Assuming that R_(min)<H_(d), ions are guaranteed to hitthe ion detector when r=R_(min) and z=0 simultaneously. This occurs forall pairs of positive integers j, n satisfying:

$\begin{matrix}{{\left( {{2\; j} - 1} \right)\frac{T_{r}}{2}} = {\left( {{2\; n} - 1} \right)\frac{T_{z}}{4}}} & (58)\end{matrix}$

which may also be written:

$\begin{matrix}{\frac{{2\; j} - 1}{{2\; n} - 1} = {\frac{1}{2}\frac{T_{z}}{T_{r}}}} & (59)\end{matrix}$

From Eqn. 27 the condition is therefore:

$\begin{matrix}{\frac{{2\; j} - 1}{{2\; n} - 1} = {\frac{\pi}{2}\frac{1}{\sqrt{k}{r\left( R_{\min} \right)}}}} & (60)\end{matrix}$

which is independent of q and m as it must be, and τ(R_(min)) is theintegral Eqn. 26:

$\begin{matrix}{{\tau \left( R_{\min} \right)} = {\frac{1}{\sqrt{2}}{\int_{R_{\min}}^{R_{\max}}\ {{r\left\lbrack {{{\overset{\sim}{U}}_{r}\left( R_{\max} \right)} - {{\overset{\sim}{U}}_{r}(r)}} \right\rbrack}^{{- 1}/2}}}}} & (61)\end{matrix}$

FIG. 18 shows the effective potential with parameters k=8×10⁴ Vm⁻²,R₁₁=R_(max)=0.075 m, b_(o)=5000 V and ΔU=1000 V. The stationary pointsof the potential are at R_(S−)=0.048 m and R_(S+)=0.350 m (off scale).R_(min)=0.034 m.

To fulfill the condition that the detector is missed N−1 times for fixedk and ΔU a point must be chosen in (b₀, R₀) space near which Eqn. 60 issatisfied for n=N but away from points at which the condition is met for1<n<N.

FIGS. 19 and 20 illustrate the trajectory corresponding to N=7,j_(max)=19 with an injection radius of r=0.065 m which passes the iondetector axially six times finally hitting on the seventh pass. FIG. 19shows the inner limit of orbit for k=8×10⁴ Vm⁻², ΔU=1000 V and R₀=0.075m.

FIG. 20 shows radial motion as a function of τ=t√{square root over(q/m)} for k=8×10⁴ Vm⁻², ΔU=1000 V, b₀=3700 V and R₀=0.065 m. Thehorizontal line at r=0.039 m represents a possible detector surface.Ions pass the ion detector axially six times, finally hitting on theseventh pass after 18.5 radial cycles. The vertical lines correspond tovalues of T for which ions pass through the plane z=0. The Δτ to pass adetector with width W_(d)=0.01 m is invisible on the scale of this plot.

FIG. 21 shows orbital motion for k=8×10⁴ Vm⁻², ΔU=1000 V, b₀=3700 V andR₀=0.065 m.

According to an alternative embodiment the ion trajectory may start nearan inflection point of effective radial potential and allow ions tospiral outwards to an annular detector.

According to another embodiment a radially bound trajectory may start atR_(min) rather than R_(max). In this case the injection radius would belower than the outer detector radius.

Method of Ion Injection into Co-Axial Cylinder TOF

A less preferred method of injecting ions into the spectrometer so thatthey achieve a stable trajectory has been shown and described above withreference to FIG. 5. According to this less preferred embodiment stabletrajectories may be achieved by reducing the voltage on the innerelectrode with respect to the outer electrode as the ions enter thedevice. This approach requires a packet of ions of limited temporaldistribution to be pulsed into the device. Ions injected in this wayadopt a range of radial positions that have a slight mass dependency.This is not ideal since it is required that all ions experience the sameoverall fields in the axial direction as they traverse the Time ofFlight mass analyser in order to achieve the highest possibleresolution.

If ions are simply injected into a pair of coaxial cylinders through asmall hole without scanning the internal field then no stabletrajectories are achieved and the injected ions will always describe atrajectory that ends up outside the space between the concentriccylinders. Two examples of such trajectories are shown in FIGS. 22A and22B.

In FIG. 22A an ion is injected at an energy such that it would describea circular trajectory halfway between the inner and outer cylinders ifit were to find itself instantaneous created at such a position and withits velocity component entirely tangential to both cylinders. It can beseen that this ion is completely unstable quickly striking the innercylinder after only about a quarter of one revolution.

In FIG. 22B the ion is injected at higher energy and is still unstablealthough it survives for about one and a half revolutions before itstrikes the outer cylinder.

So it is desirable to find a way to inject ions into the instrument suchthat the fill factor is minimised and with little or no mass dependenceon radial position within the device once the ions are in stable orbits.

The segmented coaxial cylinder geometry which is utilised according tothe preferred embodiment enables different voltages to be applied todifferent segments and different portions of such segments as required.According to the preferred embodiment the acceleration region of theTime of Flight analyser is divided into two sectors. This allows controlof the radial confining field with respect to sector angle and time. Bypulsing the voltage to an angular portion of either the inner or outercylinder the confining radial field may be pulsed ON or OFF.

FIG. 23A shows how in a preferred embodiment the device is split intotwo regions or sectors. With reference to the dials of a clock face thefirst region or sector (which extends from 12:00 o'clock around to 3:00o'clock) is separated from the rest of the electrodes (which extend from3:00 o'clock clockwise around to 12:00 o'clock).

FIG. 23A shows lines of equipotential and shows how ions that areinjected at the top of the device from the right will experience asubstantially field free flight in the first sector before they aredeflected into the main radial sector in an anticlockwise direction. Asthe field is essentially static at this point mono energetic ions ofdiffering mass take the same trajectory. This will be understood bythose skilled in the art since this is a fundamental principle ofelectrostatics.

Whilst the ions are traversing around the main sector the small sectormay be switched up to the same voltage as the main sector such that acontinuous radial trapping field is created by the time the ionscomplete the circuit (see FIG. 23B). Such a scheme allows ion packetsthat are relatively long temporally to be injected into the devicegiving the Time of Flight mass analyser a high duty cycle of operation.

The preferred embodiment is therefore particularly advantageous in thatit enables ions to be injected into the instrument such that the fillfactor is minimised and with effectively zero mass dependence on radialposition within the device once the ions are in stable orbits.

One of the problems with known multipass Time of Flight mass analysersis that it is difficult to determine the number of passes that aparticular species of ion has traversed when detected. It is known toseek to address this problem by injecting a limited mass range into themass analyser so that such aliasing is impossible. If a shorter temporalpacket of ions is injected into the analyser then it may be possible todetermine the mass by retaining the angular position of the ion packetwhen it strikes the detector.

With reference to FIGS. 24A-B three ions M1, M2, and M3 (where M1>M2>M3)may be injected into the mass analyser in a compact temporal packet.Immediately after injection in FIG. 24A it can be seen that thedifferent masses have begun to separate rotationally. With a detectorthat retains angular information it is possible to predict the change inangle φ as each of the ions traverse the analyser. The combination oftime of flight and angular position is enough to unequivocally determinethe mass to charge (and therefore the number of roundtrips of theanalyser) in certain cases. This extra angular information allows largermass ranges to be injected into the analyser at any one time, soreducing the number of different spectra to be stitched together tocover the entire mass range.

Although the present invention has been described with reference topreferred embodiments, it will be understood by those skilled in the artthat various changes in form and detail may be made without departingfrom the scope of the invention as set forth in the accompanying claims.

1. A Time of Flight mass analyser comprising: an annular ion guidehaving a longitudinal axis and comprising a first annular ion guidesection and a second annular ion guide section; a first device arrangedand adapted to introduce ions into said first annular ion guide sectionso that said ions form substantially stable circular orbits within saidfirst annular ion guide section about said longitudinal axis; an iondetector disposed within said annular ion guide; a second devicearranged and adapted to orthogonally accelerate ions in a first axialdirection from said first annular ion guide section into said secondannular ion guide section; and a third device arranged and adapted tomaintain an axial DC potential along at least a portion of said secondannular ion guide section so that said ions are reflected in a secondaxial direction which is substantially opposed to said first axialdirection and so that said ions undergo multiple axial passes throughsaid second annular ion guide section before being detected by said iondetector.
 2. (canceled)
 3. A Time of Flight mass analyser as claimed inclaim 1, wherein an ion detecting surface of said ion detector ispositioned substantially at an isochronous plane.
 4. A Time of Flightmass analyser as claimed in claim 1, wherein said second device isarranged and adapted to apply a pulsed axial electric field.
 5. A Timeof Flight mass analyser as claimed in claim 4, wherein said seconddevice is further arranged and adapted to apply a pulsed radial electricfield at substantially the same time as said pulsed axial electricfield.
 6. A Time of Flight mass analyser as claimed in claim 5, whereinsaid second device is arranged and adapted to apply a pulsed radialelectric field at substantially the same time as said pulsed axialelectric field so that said ions assume non-circular or ellipticalorbits in a plane perpendicular to said longitudinal axis.
 7. A Time ofFlight mass analyser as claimed in claim 1, wherein said second deviceis arranged and adapted to orthogonally accelerate said ions into saidsecond annular ion guide section so that said ions temporally separateaccording to their mass to charge ratio.
 8. A Time of Flight massanalyser as claimed in claim 1, wherein said second device is arrangedand adapted to orthogonally accelerate said ions so that time of flightdispersion occurs only in a longitudinal direction.
 9. A Time of Flightmass analyser as claimed in claim 1, wherein said ion detector has anion detecting surface which is arranged in a plane which issubstantially perpendicular to said longitudinal axis.
 10. A Time ofFlight mass analyser as claimed in claim 1, wherein said ion detectorhas an annular, part annular or segmented annular ion detecting surface.11. A Time of Flight mass analyser as claimed in claim 1, wherein saidion detector is located either: (i) substantially in the centre of saidannular ion guide or said second annular ion guide section; (ii)substantially at an end of said annular ion guide or said second annularion guide section; (iii) at an end of a field free region; (iv) adjacentsaid first annular ion guide section; or (v) distal to said firstannular ion guide section.
 12. A Time of Flight mass analyser as claimedin claim 1, wherein said annular ion guide comprises an innercylindrical electrode arrangement.
 13. A Time of Flight mass analyser asclaimed in claim 12, wherein said inner cylindrical electrodearrangement is axially segmented and comprises a plurality of firstelectrodes.
 14. A Time of Flight mass analyser as claimed in claim 13,wherein said annular ion guide comprises an outer cylindrical electrodearrangement.
 15. A Time of Flight mass analyser as claimed in claim 14,wherein said outer cylindrical electrode arrangement is axiallysegmented and comprises a plurality of second electrodes.
 16. A Time ofFlight mass analyser as claimed in claim 15, wherein an annular time offlight ion guiding region is formed between said inner cylindricalelectrode arrangement and said outer cylindrical electrode arrangement.17. A Time of Flight mass analyser as claimed in claim 14, furthercomprising a device arranged and adapted to apply DC potentials to saidinner cylindrical electrode arrangement or said outer cylindricalelectrode arrangement in order to maintain a radial DC potential whichacts to confine ions radially within said annular ion guide.
 18. A Timeof Flight mass analyser as claimed in claim 17, further comprising acontrol system arranged and adapted: (i) to apply one or more firstvoltages to one or more of said first electrodes or said secondelectrodes so that ions located in said first annular ion guide sectionprecess or move in orbits about said inner cylindrical electrodearrangement; and then (ii) to apply one or more second voltages to oneor more of said first electrodes or said second electrodes so that ionsare orthogonally accelerated into said second annular ion guide sectionso that ions pass along spiral paths through said second annular ionguide section in a first axial direction; (iii) optionally to apply oneor more third voltages to one or more of said first electrodes or saidsecond electrodes so that ions are reflected back in a second axialdirection which is opposed to said first axial direction; and (iv) todetermine the time of flight of ions passing through said annular ionguide or said second annular ion guide section.
 19. A Time of Flightmass analyser as claimed in claim 1, wherein said second device isarranged and adapted to apply a potential difference across said firstannular ion guide section so that ions are orthogonally accelerated outof said first annular ion guide section and pass into said secondannular ion guide section.
 20. A Time of Flight mass analyser as claimedin claim 1, wherein ions follow substantially spiral paths as the ionspass through said second annular ion guide section.
 21. A Time of Flightmass analyser as claimed in claim 20, wherein said spiral paths arenon-helical along at least a portion of said annular ion guide or saidsecond annular ion guide section such that the ratio of curvature totorsion of said spiral paths varies or is non-constant.
 22. A Time ofFlight mass analyser as claimed in claim 1, further comprising a devicearranged and adapted to maintain one or more half-parabolic or other DCpotentials along a portion of said annular ion guide or said secondannular ion guide section in order to reflect ions.
 23. A Time of Flightmass analyser as claimed in claim 1, further comprising a devicearranged and adapted to maintain one or more parabolic DC potentialsalong a portion of said annular ion guide or said second annular ionguide section so that ions undergo simple harmonic motion.
 24. A Time ofFlight mass analyser as claimed in claim 1, wherein said annular ionguide or said second annular ion guide section comprises one or morereflectrons for reflecting ions in a reverse axial direction.
 25. A Timeof Flight mass analyser as claimed in claim 1, wherein said seconddevice is arranged to orthogonally accelerate ions at a time T₁ andwherein said ions are detected by said ion detector at a subsequent timeT₂ and wherein ions having a mass to charge ratio in the range<100,100-200, 200-300, 300-400, 400-500, 500-600, 600-700, 700-800, 800-900or 900-1000 are arranged to have a total time of flight T₂−T₁ throughsaid annular ion guide or said second annular ion guide section selectedfrom the group consisting of: (i)<50 μs; (ii) 50-100 μs; (iii) 100-150μs; (iv) 150-200 μs; (v) 200-250 μs; (vi) 250-300 μs; (vii) 300-350 μs;(viii) 350-400 μs; (ix) 400-450 μs; (x) 450-500 μs; and (xi)>500 μs. 26.A Time of Flight mass analyser as claimed in claim 1, wherein ionshaving different mass to charge ratios follow substantially differentspiral paths through said annular ion guide or said second annular ionguide section.
 27. A Time of Flight mass analyser as claimed in claim 1,wherein electrodes in said first annular ion guide section are segmentedso that at least a first electric field sector and a second electricfield sector are formed in use.
 28. A Time of Flight mass analyser asclaimed in claim 27, further comprising a control system arranged andadapted at a first time T1 to inject ions substantially tangentiallyinto said first electric field sector whilst maintaining a substantiallyzero radial electric field in said first electric field sector so thatsaid ions experience a substantially field free region whilst beinginjected into said first annular ion guide section.
 29. A Time of Flightmass analyser as claimed in claim 28, wherein said control system isfurther arranged and adapted to maintain a radial electric field in saidsecond electric field sector so that at a second later time T2 ions passfrom said first electric field sector into said second electric fieldsector and become radially confined.
 30. A Time of Flight mass analyseras claimed in claim 29, wherein said control system is further arrangedand adapted at a third time T3, wherein T3>T1, to cause a radialelectric field to be maintained in said first electric field sector sothat as ions pass from said second electric field sector into said firstelectric field sector said ions continue to be radially confined andform substantially stable circular orbits within said first annular ionguide section.
 31. A Time of Flight mass analyser as claimed in claim30, wherein said second device is arranged and adapted to orthogonallyaccelerate ions from said first annular ion guide section into saidsecond annular ion guide section at a fourth time T4, wherein T4>T3. 32.A Time of Flight mass analyser as claimed in claim 1, further comprisinga control system arranged and adapted to determine the time of flight ofsaid ions orthogonally accelerated from said first annular ion guidesection into said second annular ion guide section.
 33. A Time of Flightmass analyser as claimed in claim 1, wherein said ion detector isarranged and adapted to detect ions impacting or impinging upon an iondetection surface of said ion detector.
 34. A mass spectrometercomprising a Time of Flight mass analyser as claimed in claim
 1. 35. Amethod of mass analysing ions comprising: providing an annular ion guidehaving a longitudinal axis and comprising a first annular ion guidesection and a second annular ion guide section; introducing ions intosaid first annular ion guide section so that said ions formsubstantially stable circular orbits within said first annular ion guidesection about said longitudinal axis; providing an ion detector disposedwithin said annular ion guide; orthogonally accelerating ions in a firstaxial direction from said first annular ion guide section into saidsecond annular ion guide section; and maintaining an axial DC potentialalong at least a portion of said second annular ion guide section sothat said ions are reflected in a second axial direction which issubstantially opposed to said first axial direction and so that saidions undergo multiple axial passes through said second annular ion guidesection before being detected by said ion detector.
 36. A method of massspectrometry comprising a method of mass analysing ions as claimed inclaim
 35. 37-40. (canceled)